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\AtBeginDocument{{\noindent\small
International Conference on Applications of Mathematics to Nonlinear Sciences,\newline
\emph{Electronic Journal of Differential Equations},
Conference 24 (2017), pp. 63--74.\newline
ISSN: 1072-6691. URL: http://ejde.math.txstate.edu or http://ejde.math.unt.edu}
\thanks{\copyright 2017 Texas State University.}
\vspace{8mm}}

\begin{document} \setcounter{page}{63}
\title[\hfilneg EJDE-2017/conf/24\hfil Impact of socioeconomic status on typhoid fever]
{Modeling impacts of socioeconomic status and vaccination programs on
typhoid fever epidemics}

\author[J. M. Mutua, C. T. Barker,  N. K. Vaidya \hfil EJDE-2017/conf/24\hfilneg]
{Jones M. Mutua, Colin T. Barker,  Naveen K. Vaidya}

\address{Jones M. Mutua \newline
Department of Mathematics \& Statistics,
University of Missouri-Kansas City,
Missouri 64110, USA}
\email{jmm7w6@mail.umkc.edu}

\address{Colin T. Barker \newline
Department of Mathematics \& Statistics,
University of Missouri-Kansas City,
Missouri 64110, USA}
\email{ctbn9c@mail.umkc.edu}

\address{Naveen K. Vaidya (corresponding author)\newline
Department of Mathematics \& Statistics,
San Diego State University,
California 92182, USA}
\email{nvaidya@sdsu.edu}

\thanks{Published November 15, 2017.}
\subjclass[2010]{34D20, 37N25, 92D30}
\keywords{Typhoid epidemics; disease modeling; reproduction number;
\hfill\break\indent  stability analysis; vaccination program; socioeconomic status}

\begin{abstract}
Typhoid fever is one of the most common endemic diseases in tropical
and developing countries. Socioeconomic gaps among the populations in
these countries may play a major role in the transmission and control
of Typhoid fever as well as in the effectiveness of vaccination programs.
In this study, we develop a mathematical model that describes impacts
of socioeconomic status and vaccination programs on the dynamics of
Typhoid epidemics.  We establish that the global dynamics of Typhoid
is determined by the basic reproduction number, $\mathfrak{R}_0$,
which helps identify the socioeconomic condition and vaccination program
for successful mitigation of the disease. Using numerical simulations of
our model, we show that socioeconomic status plays a significant role
in Typhoid dynamics. We find that a low socioeconomic status results
in increased Typhoid cases and a higher $\mathfrak{R}_0$ value.
Furthermore, increasing vaccination of the low socioeconomic population
results in a lower $\mathfrak{R}_0$ value, lower Typhoid infections,
and a lower disease prevalence. However, both low and high socioeconomic
class populations need to be targeted by vaccination programs to achieve
successful disease eradication.
\end{abstract}

\maketitle
\numberwithin{equation}{section}
\newtheorem{theorem}{Theorem}[section]
\allowdisplaybreaks

\section{Introduction}

Typhoid fever is a well documented disease that affects mainly Southern 
Asia \cite{Corner,Pitzer}, Sub-Saharan Africa \cite{Afoakwah,Isibor,Kariuki,Mweu},
 and most of other developing countries. It is estimated that over 21 million 
Typhoid cases occur worldwide each year, with more than half million annual 
Typhoid deaths, most of which occur in Africa \cite{Afoakwah,Kariuki,Mutua,Mweu}.
 Several previous studies have assessed Typhoid epidemics and its treatment 
and control strategies  
\cite{Edward,Mushayabasa2, Mushayabasa3,Mushayabasa,Pitzer,Pitzer2}. 
Edward \cite{Edward} explored the effects of education as a potential
 means for eradication, while other studies 
\cite{Mushayabasa2, Mushayabasa3,Mushayabasa} have used mathematical
 modeling to evaluate the impact of vaccines on controlling Typhoid fever.  
Pitzer et al. \cite{Pitzer,Pitzer2} studied the periodic impact of vaccination 
and water sanitation methods, and concluded that vaccination alone does not 
fully clear the Typhoid fever in a given population. While these studies 
significantly improve knowledge of Typhoid epidemics and its control, 
much about its quantitative understanding still remains unknown.

Corner et al. \cite{Corner} observed that socioeconomic status plays an 
important role in determining the burden of Typhoid fever.  
In particular, they show that people in lower socioeconomic class usually 
live near lakes, rivers and in environment with poor sanitation, whereas 
people with higher socioeconomic status class usually live further away from 
the water sources and in clean environment. Therefore, the living styles
 governed by the socioeconomic status clearly put people with different 
socioeconomic categories into different levels of Typhoid burden.  
As indicated by Watson and Edmunds \cite{Watson}, funding for vaccination 
programs, such as that  from the World Health Organization (WHO), 
are often limited, causing difficulty for such programs to reach the entire 
susceptible population.  In general, lower class individuals are less educated, 
and thus less likely to have access to the vaccination programs.  
Combined all these socioeconomic factors imply that high-class individuals 
have more access to care, and thus are less likely to become infected and more 
likely to recover quickly upon infection, compared to low-class individuals. 
Therefore, including socioeconomic factors into the modeling of Typhoid epidemic 
dynamics is critical to accurately evaluate prevention strategies, including 
vaccination programs.

In this study we develop a novel mathematical model to evaluate the effects of 
socioeconomic status and vaccination programs on the spread of Typhoid.  
We derive a formula for the basic reproduction number, and analyze how 
vaccination of high-class and low-class populations affects the basic reproduction 
number.  We establish the local and global stability criteria of our model and 
compute the important epidemiological quantities, such as new infection and 
prevalence, over a typhoid epidemic season.


\section{Model formulation}

We develop a model for transmission dynamics of Typhoid fever by incorporating 
socioeconomic status into the models based on previous studies \cite{Mutua,Pitzer}. 
For this, we divide the susceptible population into two classes: susceptible
 high- and susceptible low-class, denoted by $S_h$ and $S_l$, respectively.  
Both susceptible classes may lead to infection ($I$) - either by person to 
person infection or by infection from the bacteria in the environment ($B$). 
However,  the rate at which the low-class susceptible individuals become 
infected is increased by a factor of $k>1$ compared to the infection rates 
$\beta_p$ (direct person to person) and $\beta_B$ (indirect through environmental 
bacteria) of the high-class susceptible individuals. The infected individuals 
either recover ($R$) at rate $\eta$ or become asymptomatic carrier ($C$) at rate
 $\gamma$. Carriers fully recover from typhoid bacteria at a rate of $\tau$.

We assume that within one season (100 days) of Typhoid epidemic, individuals 
moving from either high class to low class, or from low class to high class 
are negligible.  $\sigma_h$ and $\sigma_l$ denote the per capita rates, 
at which individuals from high-class and low-class are vaccinated ($V$). 
The vaccinated individuals lose effectiveness at a rate of $\omega$.  
Infected individuals and asymptomatic carriers produce bacteria into the 
environment at per capita rates $p_i$ and $p_c$, respectively. 
Bacteria in the environment also grows logistically with a per capita rate 
$r$ and carrying capacity $\kappa$, and becomes non-infectious at a rate $\xi$.

We denote $\mu$ to be the natural mortality rate and let $\delta$ represent 
the mortality rate due to Typhoid infection.  The birth rate of the susceptible 
population for high class and low class individuals is given by $\Lambda_h$ 
and $\Lambda_l$, respectively.  Table \ref{tab:Params} provides the 
description of all model parameters along with the source of their numerical 
values and Figure \ref{fig:Scheme} provides a schematic diagram of the model.  
The full mathematical model can be given in a system of differential equations
 as follows:
\begin{equation} 
\begin{aligned}
\frac{{\rm d}S_h}{{\rm d}t}&=\Lambda_h+\omega V-(\beta_pI+\beta_BB+\sigma_h+\mu)S_h,\\
\frac{{\rm d}S_l}{{\rm d}t}&=\Lambda_l+\omega V-(k(\beta_pI+\beta_BB)+\sigma_l+\mu)S_l,\\
\frac{{\rm d}V}{{\rm d}t}&=\sigma_hS_h+\sigma_lS_l-(2\omega+\mu)V,\\
\frac{{\rm d}I}{{\rm d}t}&=(\beta_pI+\beta_BB)S_h+k(\beta_pI+\beta_BB)S_l-(\delta+\mu+\gamma+\eta)I,\\
\frac{{\rm d}C}{{\rm d}t}&=\gamma I-(\mu+\tau)C,\\
\frac{{\rm d}R}{{\rm d}t}&=\tau C+\eta I-\mu R,\\
\frac{{\rm d}B}{{\rm d}t}&=p_iI+p_c C+rB\big(1-\frac{B}{\kappa}\big)-\xi B.\\
\end{aligned} \label{sys:TheModel}
\end{equation}

\begin{figure}[htb]
\begin{center}
 \includegraphics[width=0.8\textwidth]{fig1} % Scheme.pdf
\end{center}
\caption{The model scheme.} \label{fig:Scheme}
\end{figure}

\begin{table}[htb]
\begin{center}
\caption{Model parameter values}
\arrayrulecolor{black}
{\rowcolors{2}{white!}{lightgray!}
	\begin{tabular}{||m{5cm}||m{5em}||m{5em}||m{4em}|}
	\hline \textbf{Parameter Definition}&\textbf{Parameter Symbol}&\textbf{Parameter Value}&\textbf{Source}\\
	\hline\hline Natural Birthrate (high class)&$\Lambda_h$ &168.12 day$^{-1}$ &Estimated\\
	\hline Natural Birthrate (low class)&$\Lambda_l$&298.88 day$^{-1}$ &Estimated\\
	\hline Natural Mortality Rate&$\mu$ &0.00004 day$^{-1}$&\cite{Mutua}\\
	\hline Disease-induced Mortality&$\delta$&0.002 day$^{-1}$&\cite{Mutua}\\
	\hline Rate of progression to carriers &$\gamma$ &0.04 day$^{-1}$&\cite{Mutua}\\
	\hline Bacterial growth rate&$r$ &0.014 day$^{-1}$ &Estimated\\
	\hline Bacterial decay rate&$\xi$ &0.0645 day$^{-1}$&Estimated\\
	\hline Rate of shedding into water supply from infected class &$p_i$ &\hbox{10 bacteria} per \hbox{individual} day$^{-1}$ &\cite{Mutua}\\
	\hline Rate of shedding into water supply from carrier class &$p_c$ &\hbox{1 bacteria} per \hbox{individual} day$^{-1}$ &\cite{Mutua}\\
	\hline Recovery rate from infection &$\eta$ &0.0657 day$^{-1}$&\cite{Mutua}\\
	\hline Recovery rate from carriers&$\tau$ &0.000315 day$^{-1}$&\cite{Mutua}\\
	\hline Infection rate (person to person)&$\beta_p$ &2.1397E-11 day$^{-1}$&Estimated\\
	\hline Infection rate (bacteria to person)&$\beta_B$ &\hbox{1.37E-09}day$^{-1}$&\cite{Mutua}\\
	\hline Vaccination rate (high class)&$\sigma_h$ &0 day$^{-1}$&Varied over [0,1]\\
	\hline Vaccination rate (low class)&$\sigma_l$ &0 day$^{-1}$&Varied over [0,1]\\	
	\hline Waning rate of vaccination effect &$\omega$ &9.0411E-04 day$^{-1}$&\cite{Mushayabasa}\\
	\hline Modifier for infection rate for low class&$k$ &1.25 day$^{-1}$&Varied over [1,10]\\
	\hline Basic Reproduction Number &$\mathfrak{R}_0$ &18.2 & Computed \\		
	\hline
\end{tabular}}
\end{center}
\label{tab:Params}
\end{table}

\section{Model Analysis}
\subsection{Feasibility}
Note that from the system (\ref{sys:TheModel}), the total human population, 
$N$, is given by $$N=S_h+S_l+I+C+R+V.$$
Also, since all parameters are positive, it can be shown that $S_h(t)\geq0$, 
and similarly all other state variables are also non-negative.

Adding up all states yields that $\frac{{\rm d}N}{{\rm d}t}\leq\Lambda-\mu N$, where 
$\Lambda=\Lambda_h+\Lambda_l$.  This implies that as $t\to\infty$, 
$N\leq\Lambda/\mu$.  This shows that $N(t)$ is ultimately bounded. 
Note also that $\frac{{\rm d}B}{{\rm d}t}\leq p_iI+p_cC+rB(1-\frac{B}{\kappa})$.  
Since $I,C\leq N\leq\frac{\Lambda}{\mu}$, 
$\frac{{\rm d}B}{{\rm d}t}\leq (p_i+p_c)\frac{\Lambda}{\mu}+rB(1-\frac{B}{\kappa})$.
As discussed in Mutua et al. \cite{Mutua}, we can easily show that $B$ 
is ultimately bounded. Thus, the solutions of system  (\ref{sys:TheModel}) 
exist globally on the interval $[0,\infty)$ and the model is mathematically 
well-posed.

\subsection{Basic Reproduction Number}
The basic reproduction number, $\mathfrak{R}_0$, is defined as the average 
number of secondary infections caused by a single infectious individual, 
introduced into the entire susceptible populations, during his or her 
infectious period. We calculated  $\mathfrak{R}_0$ for the system 
\eqref{sys:TheModel} using the next generation matrix method \cite{VW}. 
For the sake of simplicity in carrying out our analysis, we assume that, in a short period of one Typhoid epidemic season, the vaccine effectiveness does not wane ($\omega=0$).  We, however, note that our computation with $\omega\neq 0$ did not make any noticeable change on the numerical values of the reproduction number. System \eqref{sys:TheModel} has the following disease free equilibrium
\begin{align*}
\mathcal{E}_0&=\left(\frac{\Lambda_h}{\sigma_h+\mu},
\frac{\Lambda_l}{\sigma_l+\mu},\frac{\sigma_h\Lambda_h}
{\mu(\sigma_h+\mu)}+\frac{\sigma_l\Lambda_l}{\mu(\sigma_l+\mu)},0,0,0,0\right)^T.
\end{align*}
We now introduce the matrices
\[
F=\begin{pmatrix}
\beta_p(h_1+kh_2)&0&\beta_B(h_1+kh_2)\\
0&0&0\\
p_i&p_c&r\\
\end{pmatrix},\quad 
V=\begin{pmatrix}
h_3&0&0\\
-\gamma&h_4&0\\
0&0&\xi
\end{pmatrix}
\]
where
\begin{gather*}
h_1=\frac{\Lambda_h}{\sigma_h+\mu},\quad
h_2=\frac{\Lambda_l}{\sigma_l+\mu},\\
h_3=\delta+\mu+\gamma+\eta,\text{ and}\quad
h_4=\mu+\tau.
\end{gather*}
Then, the basic reproduction number, $\mathfrak{R}_0$, which is the spectral 
radius of the matrix $FV^{-1}$, is 
$$
\mathfrak{R}_0:=\frac{1}{2h_3h_4\xi}\big[h_2h_4k\xi\beta_p+\Psi_4
+\sqrt{\Psi_1-2\Psi_2+4\Psi_3(h_2k+h_1)+\Psi_4^2-2\Psi_5}\big],
$$
where
\begin{gather*}
\Psi_1=(h_2h_4k\xi\beta_p)^2+2h_2h_1k(h_4\xi\beta_p)^2,\quad
\Psi_2=rh_2h_3h_4^2k\xi\beta_p+rh_1h_3h_4^2\xi\beta_p,\\
\Psi_3=\gamma h_3h_4p_c\xi\beta_B+h_3h_4^2p_i\xi\beta_B,\quad
\Psi_4=h_1h_4\xi\beta_p+rh_3h_4,\quad 
\Psi_5=h_1h_3h_4^2r\xi\beta_p.
\end{gather*}

\subsection{Stability analysis}
The following theorem follows from \cite[Theorem 2]{VW}.

\begin{theorem} \label{thm1}
The disease-free equilibrium $\mathcal{E}_0$ of system \eqref{sys:TheModel} 
is locally asymptotically stable if $\mathfrak{R}_0<1$, and unstable if 
$\mathfrak{R}_0>1$.
\end{theorem}

Furthermore, we are able to show that $\mathfrak{R}_0$ can also provide 
the condition for the global stability of $\mathcal{E}_0$. 
The global asymptotic stability of $\mathfrak{R}_0$ is investigated using the 
procedure previously implemented for typhoid model by Mutua et al.\ \cite{Mutua}. 
We prove the global stability result in the following theorem.

\begin{theorem} \label{thm2}
If $\mathfrak{R}_0<1$, the disease-free equilibrium $\mathcal{E}_0$ of the
 system \eqref{sys:TheModel} is globally asymptotically stable.
\end{theorem}

\begin{proof}
We define the spectral bound or the stability modulus of an $n \times n$ matrix 
$M$, denoted by $s(M)$, by $s(M):=$ max$\{Re(\lambda) : \lambda$ is an 
eigenvalue of $M$\}.

Using the equations for infectious compartments of  the linearized system of 
\eqref{sys:TheModel} at $\mathcal{E}_0$, we define the following matrix:
$$ \scriptsize
J=
\begin{bmatrix}
\beta_p \left( \frac{\Lambda_h}{\sigma_h 
+\mu}\right) +k\beta_p \left(\frac{\Lambda_l}{\sigma_l +\mu}\right)
-(\delta+\mu+\gamma+\eta)&0
&\beta_B \left(\frac{\Lambda_h}{\sigma_h +\mu}\right)
+k\beta_B \left(\frac{\Lambda_l}{\sigma_l +\mu}\right)\\
\gamma&-(\mu+\tau)&0\\
p_i&p_c&(r-\xi)
\end{bmatrix}.
$$
Clearly, $J$ is irreducible and has non-negative off-diagonal elements. 
Then $s(J)$ is a simple eigenvalue of $J$ with a positive eigenvector 
(see,e.g., \cite[Theorem A.5]{Smith95}).

Assume that $\mathcal{R}_0<1$. Then we have $s(J)<0$  from the local 
stability result. Thus, we can find a sufficiently small positive number 
$\rho_0$ such that $s(J_{\rho_0})<0$ (see, e.g., \cite[Section II.5.8]{Kato}), where
$$ 
J _{\rho_0}=
\begin{bmatrix}
 a_{11}&0& a_{13}\\
\gamma&-(\mu+\tau)&0\\
p_i&p_c&(r-\xi)
\end{bmatrix},
$$
\begin{gather*}
a_{11}=\beta_p \Big( \frac{\Lambda_h}{\sigma_h +\mu} +\rho_0\Big)
+k\beta_p \Big(\frac{\Lambda_l}{\sigma_l +\mu} +\rho_0\Big)
-(\delta+\mu+\gamma+\eta),\\
a_{13}=\beta_B \Big(\frac{\Lambda_h}{\sigma_h
+\mu}+\rho_0\Big)+k\beta_B \Big(\frac{\Lambda_l}{\sigma_l +\mu}+\rho_0\Big)
\end{gather*}
is irreducible and has non-negative off-diagonal elements. From the first and 
the second equations of the system \eqref{sys:TheModel}, we obtain 
$\frac{d S_h}{d t}\leq\Lambda_h-(\sigma_h +\mu)S_h$ and 
$\frac{d S_l}{d t}\leq\Lambda_l-(\sigma_l +\mu)S_l$. 
This implies that 
$S_h(t)\leq \hat{S_h}(t)\to \frac{\Lambda_h}{\sigma_h+\mu}$ as
$t\to \infty$ and $S_l(t)\leq \hat{S_l}(t)\to \frac{\Lambda_l}{\sigma_l+\mu}$
as $t\to \infty$. Then, it follows that there is a
$t_1>0$ such that
$$
S_h(t)\leq \frac{\Lambda_h}{\sigma_h +\mu}+\rho_0 \quad \text{and}  \quad 
S_l(t)\leq \frac{\Lambda_l}{\sigma_l +\mu}+\rho_0,\ \forall \ t\geq t_1.
$$
Now, from system \eqref{sys:TheModel}, we obtain for $t\geq t_1$ that
\begin{gather*}
\begin{aligned}
 \frac{d I}{d t}
&\leq (\beta_pI+\beta_BB)\Big(\frac{\Lambda_h}{\sigma_h +\mu}+\rho_0\Big)
+k(\beta_pI+\beta_BB)\Big(\frac{\Lambda_l}{\sigma_l +\mu}+\rho_0\Big)\\
 &\quad -(\delta+\mu+\gamma+\eta)I, 
\end{aligned}\\
 \frac{d C}{d t}=\gamma I-(\mu+\tau)C,\\
 \frac{d B}{d t}\leq p_iI+p_c C+(r-\xi) B.  
\end{gather*}
Consider the auxiliary system
\begin{equation}  \label{T2}
\begin{gathered}
\begin{aligned}
 \frac{d \hat{I}}{d t}
&= (\beta_p\hat{I}+\beta_B\hat{B})\Big(\frac{\Lambda_h}{\sigma_h +\mu}+\rho_0\Big)
+k(\beta_p\hat{I}+\beta_B\hat{B})\Big(\frac{\Lambda_l}{\sigma_l +\mu}+\rho_0\Big)   \\
 &\quad -(\delta+\mu+\gamma+\eta)\hat{I},\quad  t\geq t_1,
\end{aligned} \\
 \frac{d \hat{C}}{d t} = \gamma \hat{I}-(\mu+\tau)\hat{C},\quad  t\geq t_1,\\
 \frac{d \hat{B}}{d t} = p_i\hat{I}+p_c \hat{C}+(r-\xi) \hat{B},\quad  t\geq t_1.
\end{gathered}
\end{equation}
Since $J_{\rho_0}$ is irreducible and has non-negative off-diagonal
elements, it follows that $s(J_{\rho_0})$ is simple and associates
a strongly positive eigenvector
$\tilde{v}\in \mathbb{R}^3$ (see,e.g., \cite[Theorem A.5]{SmWa}).
For any solution $(S_h(t), S_l(t),V(t),I(t),C(t),R(t),B(t))$ of
\eqref{sys:TheModel} with nonnegative initial value
$(S_h (0), S_l (0),V(0),I(0), C(0),R(0),B(0))$,
there is a sufficiently large $b> 0$
such that $( I(t_1),C(t_1), B(t_1))\leq b \tilde{v}$
holds. It is easy to see that $G(t):=be^{s(J_{\rho_0})(t-t_1)}\tilde{v}$
is a solution of \eqref{T2} with $G(t_1):=b\tilde{v}$.
By the comparison principle \cite[Theorem B.1]{SmWa},
it follows that
$$
(I(t), C(t),B(t)) \leq be^{s(J_{\rho_0})(t-t_1)}\tilde{v},\quad \forall  t\geq t_1.
$$
Since $s(J_{\rho_0})<0$, it follows that
$$
\lim_{t\to \infty}(I(t), C(t),B(t))=(0,0,0).
$$
It then follows that the equations for $S_h$ and $S_l$ are asymptotic
to the following systems
$$
\frac{d S_h(t)}{d t}= \Lambda_h-(\sigma_h +\mu) S_h(t),
$$\
and
$$
\frac{d S_l(t)}{d t}= \Lambda_h-(\sigma_l +\mu) S_l(t)
$$
and hence,
\[
\lim_{t\to\infty} S_h(t)= \frac{\Lambda_h}{\sigma_h +\mu} \quad \text{and} \quad
 \lim_{t\to\infty}S_l(t)= \frac{\Lambda_l}{\sigma_l +\mu},
\]
 by the theory for asymptotically autonomous semiflows (see, e.g.,
\cite[Corollary 4.3]{Thieme-92}). These results, along with 3rd and 6th
equations of the system \eqref{sys:TheModel}, also imply
$\lim_{t\to\infty} V(t)= \frac{\sigma_h\Lambda_h}{\mu(\sigma_h +\mu)}
+ \frac{\sigma_l\Lambda_l}{\mu(\sigma_l +\mu)}$ and
$\lim_{t\to\infty} R(t)= 0$. Thus, $\mathcal{E}_0$ is globally asymptotically stable.
\end{proof}

\section{Numerical Results}

\subsection{Base Case Scenario}
We consider a base case without any vaccination programs, i.e. 
$\sigma_h=\sigma_l = 0$. Using the mathematical formula derived in section 3.2 
and the parameter values in Table 1, we computed the basic reproduction 
number  for the base case to be $\mathfrak{R}_0 = 18.20$. 
The computed reproduction number is consistent with the previous estimate
 in Mutua et al.\ \cite{Mutua}. Based on our model, we also calculated the 
total number of new Typhoid cases generated in a single epidemic season 
($\approx 100$ days) using the formula 
$$
\int_0^{100} [(\beta_p I(t) +\beta_B B(t))S_h(t) + (k\beta_p I(t) 
+k\beta_B B(t))S_l(t)]dt.
$$ 
In this formula, the integrand 
$(\beta_p I(t) +\beta_B B(t))S_h(t) + (k\beta_p I(t) +k\beta_B B(t))S_l(t)$ 
is the rate of new infection per unit time, and thus the integral of this 
rate over the entire epidemic season gives the total new infections.
Also for $t=0$ to $t=100$, we calculated the Typhoid peak prevalence 
as percentage given by $\max\{100(I+C)/N\}$. Based on our simulations, 
we estimated approximately 2.6 million of new Typhoid cases. 
During this epidemic, the peak prevalence reached is 22\%.

\subsection{Sensitivity to base case $\mathfrak{R}_0$}
To identify important parameters that affect $\mathfrak{R}_0$, 
we performed the sensitivity analysis by calculating the sensitivity index 
$S_X$ given by 
$$
S_X=\frac{X}{\mathfrak{R}_0}.\frac{\partial \mathfrak{R}_0}{\partial X},
$$ 
where $X$ is a parameter whose sensitivity is sought. The larger the 
magnitude of the number, the greater impact that parameter has on 
$\mathfrak{R}_0$ and correspondingly, the smaller the magnitude, 
the weaker the impact on $\mathfrak{R}_0$.  Also, the negative (or positive) 
sensitivity value indicates whether the reproduction number decreases 
(or increases) when the parameter is increased. The sensitivity result 
is shown in Figure \ref{fig:Sensitivity}. Figure \ref{fig:Sensitivity} 
suggests that while the rate of infection from bacteria and the natural 
death rate have the largest impact on the basic reproduction number,
 the parameter $k$, related to socioeconomic factor, also has significant 
impact on $\mathfrak{R}_0$. This shows that the socioeconomic factor 
can not be ignored while developing prevention strategies.

\begin{figure}[htb]
\begin{center}
 \includegraphics[width=0.6\textwidth]{fig2} % TyphoidSensitivity.pdf
\end{center}
\caption{Sensitivity of Parameter Estimations to $\mathfrak{R}_0$. 
The bar corresponding to a parameter $X$ represents the value of 
the sensitivity index $S_X$.}
\label{fig:Sensitivity}
\end{figure}

\subsection{Effect of vaccination}
We studied the effects of vaccination of high and low class populations 
by varying the corresponding vaccination rates $\sigma_h$ and $\sigma_l$, 
respectively.  Our results (Figure \ref{fig:InfPrevAll}, left) 
show that increasing the vaccination rate of only low class population, 
i.e. increasing $\sigma_l$ with $\sigma_h = 0$, decreases $\mathfrak{R}_0$ 
from 18 to 10, whereas increasing the vaccination rate of only high
 class populations, i.e. increasing $\sigma_h$ with $\sigma_l = 0$, 
decreases $\mathfrak{R}_0$ from 18 to 15. While vaccinating low-class 
population seems more effective on reducing $\mathfrak{R}_0$, 
this result shows that vaccination programs targeted at only one class 
of the population might not be enough to avoid typhoid epidemics. 
However, increasing the vaccination rates of both population classes 
simultaneously can bring the value of $\mathfrak{R}_0$ below 1, 
thereby avoiding the epidemics. Therefore both classes need to be taken 
into consideration while designing proper vaccination programs.

Also, increasing the rate of vaccination of only high-class populations 
from $\sigma_h=0$ to $\sigma_h=1$ with $\sigma_l=0$ fixed leads to a decrease 
in the total new infections by nearly 1 million (from 2.6 million to 
about 1.6 million) (Figure \ref{fig:InfPrevAll}, middle), while a similar 
vaccination program targeted to low-class population only 
(i.e. increasing $\sigma_l$ from 0 to 1 with $\sigma_h=0$ fixed) 
can decrease the new infection by 2 million (from 2.6 million to about 0.5 million)
 (Figure \ref{fig:InfPrevAll}, middle). These results again suggest 
that vaccination programs which target the low-class population are more 
effective towards reducing new Typhoid cases. As expected, vaccinating 
both classes simultaneously can reduce the new infection to a negligible level.
 We also analyzed the effects of vaccination on the peak prevalence reached 
during an epidemic season (Figure \ref{fig:InfPrevAll}, right) and found the 
similar results in the sense that vaccination programs targeting low-class 
population produce lower peak of the disease prevalence. We found that the
 peak prevalence dropped from 22\% to 14\% (an 8\% drop) with vaccination 
for only high-class, compared to 16\% drop (from 22\% to 6\%) with vaccination 
for low-class only. Again, vaccination of both classes brought peak prevalence 
further down to below 4\%.

\begin{figure}[htb]
\begin{center}
 \includegraphics[width=0.32\textwidth]{fig3a} % 3D_sigmas.pdf
 \includegraphics[width=0.32\textwidth]{fig3b} % InfAll.pdf
 \includegraphics[width=0.32\textwidth]{fig3c} % PrevAll.pdf
\end{center}
\caption{Effect of vaccination on $\mathfrak{R}_0$ (left), the total new 
infections (middle) and the peak prevalence (right).}
\label{fig:InfPrevAll}
\end{figure}

\subsection{Effects of socioeconomic factor ($k$)}
Socioeconomic status impacts the living standards, including access 
to important resources such as clean water among others. To study the 
effect of variation of the socioeconomic status in the dynamics of Typhoid,
 we can consider the parameter $k$ in our model, which represents the 
Typhoid infection rate exacerbated by the deteriorated situation in the 
low class population. We let $k$ vary from $k=1$ (no effect of socioeconomic 
status) to $k=10$. We note that $k=10$ is an arbitrary maximum and is 
chosen for the purpose of demonstration. However, results for any value 
greater than $k=10$ can similarly be obtained using our model simulations. 
We also study how this effect of $k$ is altered when vaccination program is 
introduced. Specifically, we vary $k$ at four levels of vaccination:   
no vaccination ($\sigma_h=\sigma_l=0$), vaccination of high class only 
($\sigma_h=0.05$ and $\sigma_l=0$), vaccination of low class only 
($\sigma_h=0$ and $\sigma_l=0.05$), and vaccination of both high and 
low classes ($\sigma_h=0.05$ and $\sigma_l=0.05$).

\subsubsection{Effect of $k$ with no vaccination}
In Figure \ref{fig:kgraphs} (left) we show the effect of $k$ on 
the reproduction number $\mathfrak{R}_0$.  In the absence of vaccination 
($\sigma_h=\sigma_l=0$), the reproduction number grows from $\mathfrak{R}_0=18.2$ 
to $\mathfrak{R}_0=44.0$ when $k$ is increased from 1 to 10.  
The effect of $k$ on new Typhoid infections and the peak prevalence 
of the disease is presented in Figure \ref{fig:kgraphs} (middle and right). 
 We observe that with no vaccination the total new infections grow rapidly 
from 2.6 millon to 4.5 million.  As $k$ increases from $k=1$ to $k=10$ 
the peak prevalence grows to 41\% from 20\%.

\subsubsection{Effect of $k$ under high-class targeted vaccination}
Simulating the model with vaccination for the high class only 
(i.e.  $\sigma_h=0.05$, and $\sigma_l=0$), we observe that $\mathfrak{R}_0$ 
increases from $13.5$ to $43.0$ (Figure \ref{fig:kgraphs}, left).  
This change is almost the same as the case with no vaccination discussed above, 
indicating that the effect of $k$ remains almost unaltered due to high-class 
targeted vaccines.  However, the effect of high-class targeted vaccination 
is greater on the total new infections and the peak prevalence 
(Figure \ref{fig:kgraphs}, middle and right).  Our simulation results show 
that on increasing $k$ from 1 to 10, the total new infections over one 
Typhoid epidemic season increase from 1.4 million to 3.8 million, and the
 peak prevalence rises from 12.7\% to 38.9\% (Figure \ref{fig:kgraphs}).

\subsubsection{Effect of $k$ under low-class targeted vaccination}
Simulating the model with vaccination for the low class only ($\sigma_h=0$, 
and $\sigma_l=0.05$) we observe that $\mathfrak{R}_0$ begins at nearly half 
of the base case (Figure \ref{fig:kgraphs}, left) for $k=1$. In this case, 
the reproduction number is hardly affected by the increase in the value of $k$ 
(Figure \ref{fig:kgraphs}, left). On increasing $k$ from 1 to 10, the total 
new infections grow from 0.7 million to 2.9 million 
(Figure \ref{fig:kgraphs}, middle), and the peak prevalence increases 
from 7.6\% to 26.4\% (Figure \ref{fig:kgraphs}, right). 
Compared to high-class targeted vaccines, in the presence of low-class 
targeted vaccines, increase in the total new infections and  the prevalence 
due to the socioeconomic factor $k$ is smaller. Therefore, the effect of 
$k$ is smaller in the presence of low-class targeted vaccination program 
than the high-class targeted vaccines.

\subsubsection{Effect of $k$ under both-class targeted vaccination}
The effect of $k$ on all of $\mathfrak{R}_0$, the total new infection 
and the peak prevalence becomes pronounced under both-class targeted 
vaccination ($\sigma_h=0.05$ and $\sigma_l=0.05$). 
In this case (Figure \ref{fig:kgraphs}, left) we see that the basic 
reproduction number, $\mathfrak{R}_0$, changes from 0.6 at $k=1$ to 1.3 
at $k=10$. Since an increase in $k$ can cause $\mathfrak{R}_0$ greater 
than 1, the socioeconomic factor can be a determinant factor for the 
success of vaccination programs. Under both-class targeted vaccination, 
on increasing $k$ from 1 to 10,  the total new infections over one 
Typhoid epidemic season increases from 0.3 million to 2.3 million 
(Figure \ref{fig:kgraphs}, middle).  Similarly, the peak prevalence 
of the disease increases from 5\% to 25.2\% when $k$ increases from 
1 to 10 (Figure \ref{fig:kgraphs}, right).

\begin{figure}[htb]
\begin{center}
 \includegraphics[width=0.32\textwidth]{fig4a} %R0K.pdf
 \includegraphics[width=0.32\textwidth]{fig4b} %InfK.pdf
 \includegraphics[width=0.32\textwidth]{fig4c} %PrevK.pdf
\end{center}
\caption{Effect of socioeconomic  factor ($k$) $\mathfrak{R}_0$ (left), 
the total new infections (middle), and the peak prevalence (right).}
\label{fig:kgraphs}
\end{figure}

\section{Conclusion}
Typhoid fever continues to be a significant burden on populations in developing 
countries, most of which are in Southern Asia and Sub-Saharan Africa. 
 Here, we present a novel deterministic mathematical model to study the 
impact of varying socioeconomic status on Typhoid fever epidemics. 
Using mathematical analysis and simulations of our model, we show how 
socioeconomic status and vaccination program in combination impact 
the key features of Typhoid epidemics, including the basic reproduction number, 
the new Typhoid cases, and the peak prevalence of the disease. 
Given the significant effects of socioeconomic status on disease epidemic 
outcomes revealed by our results, we recommend targeting both-class population 
rather than the single-class population for developing Typhoid intervention 
strategies including effective vaccination programs, even though the 
targeting low-class population provides better outcomes than the high-class.

\subsection*{Acknowledgements}
 This research was supported by NSF grant DMS-1616299 (NKV) and 
the start-up fund from San Diego State University (NKV).  

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